TWOBITTOFA — Snakemake Wrappers tags/0.59.1 documentation

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I am trying to convert "hg19.2bit" to "hg19.fa" by the "twoBitToFa". I downloaded both files. I have "ubuntu" linux software. I used the following command line to convert the "2bit" to "fa" format as : "twoBitToFa hg19.2bit hg19.fa" but it says "twoBitToFa" is not recognized as a command. what sould I do to use "twoBitToFa" on linux. sincerely, mehmet.--Mehmet Ilyas COSACAK Undergraduate twoBitToFa: command not found Bioinformatics. I believe you need to study a little bit more about bash and command line interfaces. conda install linux-64 v377; osx-64 v377; To install this package with conda run one of the following: conda install -c bioconda ucsc-twobittofa conda install -c bioconda/label/cf201901 ucsc-twobittofa twobittofa hg38.2bit hg38.fasta. I could not get it to just run like this. Does this have something to do with exporting the path or something (new to this, sorry)? This is what I get: [~/Desktop] >>>>> chmod 744 twoBitToFa.dms [~/Desktop] >>>>> twobittofa mm10.2bit mm10.fa -bash: twobittofa: command not found twoBitToFa – Convert all or part of .2bit file to fasta format. Usage: twoBitToFa input.2bit output.fa. Options:-seq=name Restrict this to just one sequence. -start=X Start at given position in sequence (zero-based). -end=X End at given position in sequence (non-inclusive). -seqList=file File containing list of the desired sequence names in the format seqSpec[:start-end], e.g. chr1 or chr1:0

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